I have a similar situation with a Keychain, MDS and Thunderbolts and all items are within one or two rides of being new.
After a trial and error process of swapping parts around onto my older drive train I found the Thunderbolts are responsible for the tight and loose spots. The old drive train was a standard chain, beaten MDS and Twombolts and the chain tension was always equal with no questionable spots and the MDS straight.
Turns out the Thunderbolts sprocket bolt hole is a fraction below being level with the sprocket recess and after tensioning the sprocket bolt down then spinning the cranks the disk was pulled out of alignment TOWARDS the sprocket bolt. Backing off the sprocket bolts tension the disk was again nice and straight.
Did all the same again with the Twombolts and they do not cause the disk to be pulled over and never had an issue.
Changed gearing on my spare bike which has Thunderbolts and guess what? Exactly the same issue of chain tension being tight and loose with the disk pulled over to the sprocket bolt.
After looking at the wear pattern on your sprocket it appears you might have a similar situation?